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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034051 through 18771 annotations produced 1 hits



Myelodysplasia/myeloid leukemia factor (Mlf):

Annotation Number : CG8295
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034051
Gbrowse : chr2R:11823344-11827578 (-) // 100.0 //
Probeset : 1624559_a_at
Accessions : protein= NP_001163164; /// NP_523753; /// NP_725501; /// NP_725502; /// NP_995847;, nucleotide= NM_001169693; /// NM_079029; /// NM_166122; /// NM_166123; /// NM_206125;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005705 // polytene chromosome interband // inferred from direct as
FlyMine data for FBgn0034051.
BDGP gene expression has embryonic in situ data for Mlf: 20 pix of staining in 12 body parts.
BioGrid reports that CG8295 interacts with CG5838 .
TRiP has 1 RNAi stocks for FBgn0034051 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034051 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1276 ± 294 of 4 2.10Up
Head752 ± 374 of 4 1.20None
Eye1335 ± 294 of 4 2.17Up
Thoracicoabdominal ganglion1530 ± 144 of 4 2.50Up
Salivary gland700 ± 204 of 4 1.14None
Crop498 ± 114 of 4 0.80None
Midgut299 ± 84 of 4 0.50Down
Tubule411 ± 134 of 4 0.70Down
Hindgut340 ± 144 of 4 0.60Down
Heart375 ± 74 of 4 0.61Down
Fat body554 ± 284 of 4 0.90None
Ovary882 ± 154 of 4 1.40Up
Testis1641 ± 274 of 4 2.70Up
Male accessory glands511 ± 144 of 4 0.80None
Virgin spermatheca609 ± 254 of 4 0.99None
Mated spermatheca627 ± 264 of 4 1.02None
Adult carcass275 ± 64 of 4 0.40Down
Larval CNS947 ± 464 of 4 1.54Up
Larval Salivary gland627 ± 104 of 4 1.02None
Larval midgut285 ± 74 of 4 0.46Down
Larval tubule335 ± 64 of 4 0.50Down
Larval hindgut407 ± 44 of 4 0.66Down
Larval fat body656 ± 944 of 4 1.10None
Larval trachea469 ± 294 of 4 0.76None
Larval carcass363 ± 174 of 4 0.59Down
S2 cells (growing)823 ± 94 of 4 1.34Up
Whole fly615 ± 534 of 4

Looking for FBgn0034051. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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