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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034054 through 18771 annotations produced 1 hits



(CG8366):

Annotation Number : CG8366
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034054
Gbrowse : chr2R:11842546-11844143 (+) // 100.0 //
Probeset : 1632519_at
Accessions : protein= NP_611068;, nucleotide= NM_137224;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0004518 // nuclease activity // inferred from electron
FlyMine data for FBgn0034054.
BDGP gene expression has embryonic in situ data for CG8366: 15 pix of staining in 17 body parts.
VDRC has 2 RNAi stocks for FBgn0034054 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 04 of 4 1.50Up
Head35 24 of 4 0.80None
Eye59 34 of 4 1.31Up
Thoracicoabdominal ganglion55 24 of 4 1.20None
Salivary gland65 22 of 4 1.45Up
Crop49 44 of 4 1.10None
Midgut18 20 of 4 0.40Down
Tubule32 03 of 4 0.70Down
Hindgut39 34 of 4 0.90None
Heart18 14 of 4 0.41Down
Fat body24 60 of 4 0.54Down
Ovary71 14 of 4 1.60Up
Testis49 24 of 4 1.10None
Male accessory glands68 64 of 4 1.50Up
Virgin spermatheca41 24 of 4 0.91None
Mated spermatheca48 44 of 4 1.08None
Adult carcass28 50 of 4 0.60None
Larval CNS72 34 of 4 1.60Up
Larval Salivary gland63 54 of 4 1.40None
Larval midgut24 20 of 4 0.54Down
Larval tubule38 34 of 4 0.80None
Larval hindgut42 14 of 4 0.94None
Larval fat body40 24 of 4 0.90None
Larval trachea31 34 of 4 0.70Down
Larval carcass36 14 of 4 0.80None
S2 cells (growing)35 24 of 4 0.79None
Whole fly45 44 of 4

Looking for FBgn0034054. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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