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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034057 through 18771 annotations produced 1 hits


Annotation Number : CG8314
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034057
Gbrowse : chr2R:11877178-11878787 (-) // 100.0 //
Probeset : 1630861_at
Accessions : protein= NP_611070;, nucleotide= NM_137226;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0034057.
BDGP gene expression has embryonic in situ data for CG8314: 12 pix of staining in 1 body parts.
Homophila reports that CG8314 is a close match (3e-13) to human gene (NP_057116), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0034057 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain160 54 of 4 1.70Up
Head84 64 of 4 0.90None
Eye93 54 of 4 0.97None
Thoracicoabdominal ganglion154 104 of 4 1.60Up
Salivary gland92 34 of 4 0.97None
Crop119 54 of 4 1.30None
Midgut229 74 of 4 2.40Up
Tubule164 64 of 4 1.70Up
Hindgut157 44 of 4 1.60Up
Heart143 34 of 4 1.50Up
Fat body162 154 of 4 1.70Up
Ovary128 54 of 4 1.30Up
Testis44 34 of 4 0.50Down
Male accessory glands83 54 of 4 0.90None
Virgin spermatheca105 54 of 4 1.11None
Mated spermatheca107 24 of 4 1.13None
Adult carcass140 164 of 4 1.50None
Larval CNS171 234 of 4 1.79Up
Larval Salivary gland73 44 of 4 0.77None
Larval midgut321 164 of 4 3.37Up
Larval tubule169 24 of 4 1.80Up
Larval hindgut174 94 of 4 1.83Up
Larval fat body108 84 of 4 1.10None
Larval trachea235 94 of 4 2.46Up
Larval carcass167 64 of 4 1.75Up
S2 cells (growing)433 94 of 4 4.54Up
Whole fly95 94 of 4

Looking for FBgn0034057. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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