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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034060 through 18771 annotations produced 1 hits



(CG8370):

Annotation Number : CG8370
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034060
Gbrowse : chr2R:11888627-11894413 (+) // 100.0 //
Probeset : 1629053_at
Accessions : protein= NP_611073;, nucleotide= NM_137229;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0034060.
VDRC has 1 RNAi stocks for FBgn0034060 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 ± 94 of 4 1.30Up
Head125 ± 34 of 4 0.90None
Eye102 ± 24 of 4 0.71Down
Thoracicoabdominal ganglion169 ± 54 of 4 1.20None
Salivary gland75 ± 24 of 4 0.52Down
Crop145 ± 74 of 4 1.00None
Midgut95 ± 14 of 4 0.70Down
Tubule125 ± 84 of 4 0.90Down
Hindgut117 ± 24 of 4 0.80None
Heart193 ± 54 of 4 1.34Up
Fat body211 ± 84 of 4 1.46Up
Ovary259 ± 24 of 4 1.80Up
Testis47 ± 04 of 4 0.30Down
Male accessory glands66 ± 34 of 4 0.50Down
Virgin spermatheca254 ± 84 of 4 1.77Up
Mated spermatheca236 ± 54 of 4 1.64Up
Adult carcass167 ± 64 of 4 1.20None
Larval CNS188 ± 134 of 4 1.31Up
Larval Salivary gland107 ± 54 of 4 0.75Down
Larval midgut87 ± 54 of 4 0.60Down
Larval tubule132 ± 14 of 4 0.90None
Larval hindgut115 ± 44 of 4 0.80None
Larval fat body127 ± 94 of 4 0.90None
Larval trachea127 ± 104 of 4 0.89None
Larval carcass101 ± 24 of 4 0.70Down
S2 cells (growing)199 ± 74 of 4 1.38Up
Whole fly144 ± 114 of 4

Looking for FBgn0034060. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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