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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034063 through 18771 annotations produced 1 hits



(CG8389):

Annotation Number : CG8389
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034063
Gbrowse : chr2R:11895876-11901329 (+) // 100.0 //
Probeset : 1637774_s_at
Accessions : protein= NP_611076; /// NP_725515;, nucleotide= NM_137232; /// NM_166132;
Interpro : 0015355 // secondary active monocarboxylate transmembrane transporter activity // inferred from sequence or structural s
FlyMine data for FBgn0034063.
Homophila reports that CG8389 is a close match (2e-11) to human gene CJMG;MCT12;SLC16A12 (NP_998771), a gene associated with Cataract, juvenile, with microcornea and glucosuria, 612018 (3).
VDRC has 2 RNAi stocks for FBgn0034063 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain104 44 of 4 0.80Down
Head134 264 of 4 1.00None
Eye128 94 of 4 0.97None
Thoracicoabdominal ganglion85 24 of 4 0.60Down
Salivary gland46 94 of 4 0.35Down
Crop48 34 of 4 0.40Down
Midgut44 14 of 4 0.30Down
Tubule836 414 of 4 6.30Up
Hindgut51 14 of 4 0.40Down
Heart243 214 of 4 1.84Up
Fat body435 334 of 4 3.30Up
Ovary132 74 of 4 1.00None
Testis81 24 of 4 0.60Down
Male accessory glands47 44 of 4 0.40Down
Virgin spermatheca243 184 of 4 1.85Up
Mated spermatheca463 394 of 4 3.51Up
Adult carcass209 214 of 4 1.60Up
Larval CNS147 74 of 4 1.12Up
Larval Salivary gland47 44 of 4 0.36Down
Larval midgut54 54 of 4 0.41Down
Larval tubule1790 794 of 413.60Up
Larval hindgut43 74 of 4 0.33Down
Larval fat body615 1654 of 4 4.70None
Larval trachea66 84 of 4 0.51Down
Larval carcass51 74 of 4 0.39Down
S2 cells (growing)136 34 of 4 1.03None
Whole fly131 44 of 4

Looking for FBgn0034063. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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