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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034068 through 18771 annotations produced 1 hits



casper (casp):

Annotation Number : CG8400
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034068
Gbrowse : chr2R:11912131-11915546 (-) // 100.0 //
Probeset : 1639140_at
Accessions : protein= NP_611080; /// NP_995848;, nucleotide= NM_137236; /// NM_206126;
FlyMine data for FBgn0034068.
BDGP gene expression has embryonic in situ data for CG8400: 8 pix of staining in 1 body parts.
BioGrid reports that CG8400 interacts with CG9083 .
VDRC has 2 RNAi stocks for FBgn0034068 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain230 ± 44 of 4 1.00None
Head132 ± 84 of 4 0.60Down
Eye172 ± 94 of 4 0.73Down
Thoracicoabdominal ganglion190 ± 74 of 4 0.80None
Salivary gland240 ± 114 of 4 1.02None
Crop181 ± 74 of 4 0.80Down
Midgut265 ± 114 of 4 1.10None
Tubule274 ± 74 of 4 1.20Up
Hindgut175 ± 74 of 4 0.70Down
Heart210 ± 64 of 4 0.89None
Fat body203 ± 184 of 4 0.86None
Ovary449 ± 114 of 4 1.90Up
Testis421 ± 74 of 4 1.80Up
Male accessory glands161 ± 94 of 4 0.70Down
Virgin spermatheca219 ± 154 of 4 0.93None
Mated spermatheca199 ± 124 of 4 0.84None
Adult carcass166 ± 104 of 4 0.70Down
Larval CNS312 ± 254 of 4 1.32Up
Larval Salivary gland240 ± 134 of 4 1.02None
Larval midgut364 ± 414 of 4 1.54Up
Larval tubule641 ± 74 of 4 2.70Up
Larval hindgut271 ± 174 of 4 1.15None
Larval fat body296 ± 104 of 4 1.30Up
Larval trachea198 ± 74 of 4 0.84None
Larval carcass204 ± 224 of 4 0.86None
S2 cells (growing)296 ± 14 of 4 1.25Up
Whole fly236 ± 174 of 4

Looking for FBgn0034068. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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