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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034069 through 18771 annotations produced 1 hits



(CG8401):

Annotation Number : CG8401
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034069
Gbrowse : chr2R:11916106-11917596 (+) // 100.0 //
Probeset : 1634816_at
Accessions : protein= NP_725520;, nucleotide= NM_166136;
FlyMine data for FBgn0034069.
VDRC has 3 RNAi stocks for FBgn0034069 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain304 ± 74 of 425.20Up
Head72 ± 34 of 4 6.00Up
Eye5 ± 11 of 4 0.45Down
Thoracicoabdominal ganglion218 ± 94 of 418.10Up
Salivary gland4 ± 10 of 4 0.36Down
Crop1 ± 00 of 4 0.10Down
Midgut2 ± 00 of 4 0.20Down
Tubule1 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.30Down
Heart2 ± 10 of 4 0.18Down
Fat body3 ± 10 of 4 0.27Down
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 01 of 4 0.30Down
Male accessory glands4 ± 10 of 4 0.40Down
Virgin spermatheca2 ± 00 of 4 0.17Down
Mated spermatheca1 ± 00 of 4 0.10Down
Adult carcass7 ± 20 of 4 0.60None
Larval CNS62 ± 54 of 4 5.19Up
Larval Salivary gland1 ± 00 of 4 0.15Down
Larval midgut3 ± 10 of 4 0.32Down
Larval tubule2 ± 10 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.16Down
Larval fat body0 ± 00 of 4 0.10Down
Larval trachea2 ± 20 of 4 0.19Down
Larval carcass3 ± 10 of 4 0.26Down
S2 cells (growing)1 ± 00 of 4 0.12Down
Whole fly12 ± 21 of 4

Looking for FBgn0034069. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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