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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034076 through 18771 annotations produced 1 hits


Juvenile hormone esterase duplication (Jhedup):

Annotation Number : CG8424
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034076
Gbrowse : chr2R:12004615-12006370 (+) // 100.0 //
Probeset : 1640923_at
Accessions : protein= NP_611085;, nucleotide= NM_137241;
Interpro : 0004091 // carboxylesterase activity // inferred from sequence or structural similarity /// 0004091 // carboxylesterase
FlyMine data for FBgn0034076.
Homophila reports that CG8424 is a close match (2e-21) to human gene AITD3;TG (NP_003226), a gene associated with Goiter, adolescent multinodular (1);Goiter, nonendemic, simple (3);Hypothyroidism, hereditary congenital (3);{Autoimmune thyroid disease, susceptibility to 3}, 608175 (3).
TRiP has 1 RNAi stocks for FBgn0034076 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034076 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head991 ± 884 of 415.60Up
Eye89 ± 423 of 4 1.40None
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland7 ± 40 of 4 0.12Down
Crop2 ± 00 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule4 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.00Down
Heart2 ± 10 of 4 0.04Down
Fat body7 ± 51 of 4 0.11Down
Ovary2 ± 10 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands6 ± 31 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.06Down
Mated spermatheca6 ± 11 of 4 0.10Down
Adult carcass5 ± 10 of 4 0.10Down
Larval CNS3 ± 11 of 4 0.06Down
Larval Salivary gland5 ± 21 of 4 0.09Down
Larval midgut2 ± 10 of 4 0.04Down
Larval tubule456 ± 694 of 4 7.20Up
Larval hindgut3 ± 00 of 4 0.06Down
Larval fat body5 ± 22 of 4 0.10Down
Larval trachea2 ± 10 of 4 0.04Down
Larval carcass5 ± 00 of 4 0.08Down
S2 cells (growing)2 ± 00 of 4 0.04Down
Whole fly63 ± 44 of 4

Looking for FBgn0034076. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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