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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034082 through 18771 annotations produced 1 hits



(CG10734):

Annotation Number : CG10734
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034082
Gbrowse : chr2R:12044915-12046299 (-) // 100.0 //
Probeset : 1640885_at
Accessions : protein= NP_611090;, nucleotide= NM_137246;
FlyMine data for FBgn0034082.
BioGrid reports that CG10734 interacts with CG11680 .
VDRC has 2 RNAi stocks for FBgn0034082 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland9 ± 30 of 4 0.03Down
Crop7 ± 00 of 4 0.00Down
Midgut2 ± 00 of 4 0.00Down
Tubule11 ± 21 of 4 0.00Down
Hindgut8 ± 12 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body8 ± 10 of 4 0.03Down
Ovary1 ± 00 of 4 0.00Down
Testis2224 ± 864 of 4 7.90Up
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.01Down
Mated spermatheca4 ± 11 of 4 0.02Down
Adult carcass9 ± 30 of 4 0.00Down
Larval CNS7 ± 52 of 4 0.03Down
Larval Salivary gland2 ± 10 of 4 0.01Down
Larval midgut7 ± 01 of 4 0.03Down
Larval tubule4 ± 00 of 4 0.00Down
Larval hindgut3 ± 11 of 4 0.01Down
Larval fat body337 ± 1944 of 4 1.20None
Larval trachea16 ± 201 of 4 0.06Down
Larval carcass5 ± 20 of 4 0.02Down
S2 cells (growing)9 ± 12 of 4 0.03Down
Whole fly283 ± 124 of 4

Looking for FBgn0034082. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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