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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034083 through 18771 annotations produced 1 hits



kekkon-like (lbk):

Annotation Number : CG8434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034083
Gbrowse : chr2R:12051851-12057025 (+) // 100.0 //
Probeset : 1632672_at
Accessions : protein= NP_611091;, nucleotide= NM_137247;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0034083.
Homophila reports that CG8434 is a close match (3e-11) to human gene CAML1;HSAS1;L1CAM (NP_076493), a gene associated with Corpus callosum, partial agenesis of, 304100 (3);CRASH syndrome, 303350 (3);Hydrocephalus due to aqueductal stenosis, 307000 (3);Hydrocephalus with congenital idiopathic intestinal pseudoobstruction, 307000 (3);Hydrocephalus with Hirschsprung disease and cleft palate, 142623 (3);MASA syndrome, 303350 (3).
TRiP has 1 RNAi stocks for FBgn0034083 available for purchase.
VDRC has 6 RNAi stocks for FBgn0034083 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain195 ± 34 of 4 2.20Up
Head97 ± 64 of 4 1.10None
Eye138 ± 174 of 4 1.57None
Thoracicoabdominal ganglion191 ± 64 of 4 2.20Up
Salivary gland164 ± 54 of 4 1.87Up
Crop187 ± 34 of 4 2.10Up
Midgut365 ± 94 of 4 4.10Up
Tubule190 ± 34 of 4 2.20Up
Hindgut195 ± 64 of 4 2.20Up
Heart120 ± 124 of 4 1.36None
Fat body52 ± 54 of 4 0.59Down
Ovary106 ± 34 of 4 1.20None
Testis53 ± 24 of 4 0.60Down
Male accessory glands120 ± 64 of 4 1.40Up
Virgin spermatheca162 ± 104 of 4 1.84Up
Mated spermatheca155 ± 64 of 4 1.77Up
Adult carcass77 ± 44 of 4 0.90None
Larval CNS272 ± 294 of 4 3.08Up
Larval Salivary gland131 ± 44 of 4 1.49Up
Larval midgut231 ± 64 of 4 2.62Up
Larval tubule195 ± 114 of 4 2.20Up
Larval hindgut173 ± 24 of 4 1.97Up
Larval fat body208 ± 274 of 4 2.40Up
Larval trachea172 ± 54 of 4 1.95Up
Larval carcass152 ± 74 of 4 1.73Up
S2 cells (growing)275 ± 104 of 4 3.12Up
Whole fly88 ± 64 of 4

Looking for FBgn0034083. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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