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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034086 through 18771 annotations produced 1 hits



(CG8441):

Annotation Number : CG8441
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034086
Gbrowse : chr2R:12072618-12073506 (-) // 100.0 //
Probeset : 1637429_at
Accessions : protein= NP_611094;, nucleotide= NM_137250;
FlyMine data for FBgn0034086.
BDGP gene expression has embryonic in situ data for CG8441: 12 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034086 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 14 of 4 0.60Down
Head44 ± 33 of 4 0.60Down
Eye61 ± 54 of 4 0.85None
Thoracicoabdominal ganglion46 ± 33 of 4 0.60Down
Salivary gland72 ± 80 of 4 1.00None
Crop54 ± 24 of 4 0.70None
Midgut37 ± 40 of 4 0.50Down
Tubule52 ± 12 of 4 0.70Down
Hindgut48 ± 24 of 4 0.70Down
Heart53 ± 14 of 4 0.73Down
Fat body58 ± 70 of 4 0.81None
Ovary133 ± 74 of 4 1.80Up
Testis63 ± 24 of 4 0.90None
Male accessory glands94 ± 52 of 4 1.30Up
Virgin spermatheca59 ± 30 of 4 0.81None
Mated spermatheca62 ± 20 of 4 0.85None
Adult carcass29 ± 30 of 4 0.40Down
Larval CNS124 ± 64 of 4 1.71Up
Larval Salivary gland77 ± 24 of 4 1.07None
Larval midgut37 ± 20 of 4 0.51Down
Larval tubule50 ± 23 of 4 0.70Down
Larval hindgut52 ± 24 of 4 0.72Down
Larval fat body35 ± 40 of 4 0.50Down
Larval trachea97 ± 54 of 4 1.34Up
Larval carcass58 ± 04 of 4 0.81None
S2 cells (growing)75 ± 24 of 4 1.03None
Whole fly72 ± 64 of 4

Looking for FBgn0034086. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime