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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034092 through 18771 annotations produced 1 hits



(CG7798):

Annotation Number : CG7798
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034092
Gbrowse : chr2R:12109685-12110132 (-) // 100.0 //
Probeset : 1640037_at
Accessions : protein= NP_611098;, nucleotide= NM_137254;
Interpro : "0003796 // lysozyme activity // inferred from electronic annotation /// 0003796 // lysozyme activity // inferred from s
FlyMine data for FBgn0034092.
Homophila reports that CG7798 is a close match (2e-18) to human gene LYZ (NP_000230), a gene associated with Amyloidosis, renal, 105200 (3).
VDRC has 1 RNAi stocks for FBgn0034092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 10 of 4 0.90None
Head7 11 of 4 0.90None
Eye6 01 of 4 0.77None
Thoracicoabdominal ganglion7 12 of 4 0.90None
Salivary gland28 43 of 4 3.43Up
Crop10 22 of 4 1.20None
Midgut13 13 of 4 1.70Up
Tubule9 01 of 4 1.10None
Hindgut10 23 of 4 1.20None
Heart3 11 of 4 0.39None
Fat body14 33 of 4 1.74Up
Ovary3 11 of 4 0.40Down
Testis16 24 of 4 1.90Up
Male accessory glands8 10 of 4 1.00None
Virgin spermatheca14 14 of 4 1.75Up
Mated spermatheca17 34 of 4 2.05None
Adult carcass7 10 of 4 0.80None
Larval CNS5 21 of 4 0.64None
Larval Salivary gland8 12 of 4 1.00None
Larval midgut15 13 of 4 1.78Up
Larval tubule13 14 of 4 1.60Up
Larval hindgut9 12 of 4 1.10None
Larval fat body12 22 of 4 1.50None
Larval trachea8 31 of 4 0.95None
Larval carcass115 184 of 413.76Up
S2 cells (growing)10 04 of 4 1.25None
Whole fly8 11 of 4

Looking for FBgn0034092. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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