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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034097 through 18771 annotations produced 1 hits


(CG3687):

Annotation Number : CG3687
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034097
Gbrowse : chr2R:12124276-12124986 (+) // 100.0 //
Probeset : 1629870_at
Accessions : protein= NP_611102;, nucleotide= NM_137258;
FlyMine data for FBgn0034097.
BDGP gene expression has embryonic in situ data for CG3687: 2 pix of staining in 1 body parts.
BioGrid reports that CG3687 interacts with CG5608 .
VDRC has 2 RNAi stocks for FBgn0034097 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.05Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.00Down
Salivary gland6 ± 40 of 4 0.08Down
Crop3 ± 10 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.03Down
Fat body4 ± 30 of 4 0.05Down
Ovary1 ± 00 of 4 0.00Down
Testis969 ± 284 of 412.50Up
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.03Down
Mated spermatheca5 ± 10 of 4 0.07Down
Adult carcass4 ± 20 of 4 0.10Down
Larval CNS2 ± 20 of 4 0.03Down
Larval Salivary gland8 ± 10 of 4 0.11Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.03Down
Larval fat body105 ± 474 of 4 1.40None
Larval trachea8 ± 111 of 4 0.11Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly77 ± 44 of 4

Looking for FBgn0034097. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime