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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034099 through 18771 annotations produced 1 hits


(CG15708):

Annotation Number : CG15708
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034099
Gbrowse : chr2R:12128439-12129439 (-) // 100.0 //
Probeset : 1633282_at
Accessions : protein= NP_611104;, nucleotide= NM_137260;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0034099.
BDGP gene expression has embryonic in situ data for CG15708: 2 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034099 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head7 ± 10 of 4 0.20Down
Eye3 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland5 ± 00 of 4 0.12Down
Crop4 ± 20 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart6 ± 00 of 4 0.15Down
Fat body7 ± 10 of 4 0.16Down
Ovary3 ± 10 of 4 0.10Down
Testis687 ± 284 of 415.00Up
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca5 ± 20 of 4 0.11Down
Mated spermatheca5 ± 10 of 4 0.13Down
Adult carcass6 ± 30 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.04Down
Larval Salivary gland3 ± 10 of 4 0.08Down
Larval midgut5 ± 10 of 4 0.11Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.08Down
Larval fat body62 ± 333 of 4 1.40None
Larval trachea2 ± 20 of 4 0.06Down
Larval carcass6 ± 10 of 4 0.14Down
S2 cells (growing)5 ± 00 of 4 0.11Down
Whole fly45 ± 44 of 4

Looking for FBgn0034099. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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