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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034104 through 18771 annotations produced 1 hits



(CG15705):

Annotation Number : CG15705
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034104
Gbrowse : chr2R:12168454-12169134 (+) // 98.94 //
Probeset : 1624229_at
Accessions : protein= NP_611109;, nucleotide= NM_137265;
FlyMine data for FBgn0034104.
BioGrid reports that CG15705 interacts with CG5650 CG7919 CG9893 CG2774 .
VDRC has 3 RNAi stocks for FBgn0034104 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.10Down
Salivary gland6 ± 10 of 4 0.11Down
Crop3 ± 11 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut1 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body1 ± 10 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis714 ± 314 of 412.00Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.06Down
Mated spermatheca3 ± 00 of 4 0.06Down
Adult carcass6 ± 30 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.05Down
Larval midgut3 ± 00 of 4 0.06Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body53 ± 233 of 4 0.90None
Larval trachea3 ± 21 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.04Down
Whole fly59 ± 54 of 4

Looking for FBgn0034104. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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