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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034109 through 18771 annotations produced 1 hits



(CG7747):

Annotation Number : CG7747
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034109
Gbrowse : chr2R:12179768-12181631 (-) // 99.76 //
Probeset : 1631622_at
Accessions : protein= NP_611113;, nucleotide= NM_137269;
Pathway : via spliceosome // inferred by curator /// 0006457 // protein folding // inferred from electronic annotation"
Interpro : 0071013 // catalytic step 2 spliceosome // inferred from direct assay
FlyMine data for FBgn0034109.
BDGP gene expression has embryonic in situ data for CG7747: 6 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034109 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 34 of 4 1.50Up
Head61 14 of 4 0.90Down
Eye87 34 of 4 1.27Up
Thoracicoabdominal ganglion82 44 of 4 1.20None
Salivary gland91 114 of 4 1.34None
Crop84 64 of 4 1.20None
Midgut51 14 of 4 0.70Down
Tubule95 54 of 4 1.40Up
Hindgut70 24 of 4 1.00None
Heart47 44 of 4 0.69Down
Fat body44 14 of 4 0.65Down
Ovary118 24 of 4 1.70Up
Testis27 04 of 4 0.40Down
Male accessory glands62 34 of 4 0.90None
Virgin spermatheca68 14 of 4 0.99None
Mated spermatheca56 34 of 4 0.82Down
Adult carcass55 24 of 4 0.80Down
Larval CNS123 154 of 4 1.81Up
Larval Salivary gland89 54 of 4 1.31Up
Larval midgut52 34 of 4 0.77Down
Larval tubule105 64 of 4 1.50Up
Larval hindgut69 24 of 4 1.01None
Larval fat body49 64 of 4 0.70None
Larval trachea80 24 of 4 1.17Up
Larval carcass67 24 of 4 0.99None
S2 cells (growing)99 44 of 4 1.44Up
Whole fly68 14 of 4

Looking for FBgn0034109. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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