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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034110 through 18771 annotations produced 1 hits



Autophagy-specific gene 9 (Atg9):

Annotation Number : CG3615
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034110
Gbrowse : chr2R:12181906-12184740 (+) // 100.0 //
Probeset : 1626033_at
Accessions : protein= NP_611114;, nucleotide= NM_137270;
FlyMine data for FBgn0034110.
BDGP gene expression has embryonic in situ data for CG3615: 27 pix of staining in 5 body parts.
TRiP has 2 RNAi stocks for FBgn0034110 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034110 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 24 of 4 0.80Down
Head122 44 of 4 1.10None
Eye117 54 of 4 1.07None
Thoracicoabdominal ganglion94 24 of 4 0.90Down
Salivary gland176 114 of 4 1.60Up
Crop177 74 of 4 1.60Up
Midgut202 54 of 4 1.80Up
Tubule204 94 of 4 1.90Up
Hindgut192 44 of 4 1.70Up
Heart174 74 of 4 1.58Up
Fat body259 194 of 4 2.35Up
Ovary107 24 of 4 1.00None
Testis23 14 of 4 0.20Down
Male accessory glands172 74 of 4 1.60Up
Virgin spermatheca300 204 of 4 2.73Up
Mated spermatheca210 64 of 4 1.91Up
Adult carcass210 54 of 4 1.90Up
Larval CNS73 34 of 4 0.66Down
Larval Salivary gland94 34 of 4 0.86Down
Larval midgut377 454 of 4 3.43Up
Larval tubule504 194 of 4 4.60Up
Larval hindgut256 334 of 4 2.33Up
Larval fat body164 194 of 4 1.50None
Larval trachea139 344 of 4 1.26None
Larval carcass494 834 of 4 4.49Up
S2 cells (growing)245 34 of 4 2.23Up
Whole fly110 44 of 4

Looking for FBgn0034110. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime