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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034114 through 18771 annotations produced 1 hits



(CG4282):

Annotation Number : CG4282
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034114
Gbrowse : chr2R:12209692-12212314 (+) // 100.0 //
Probeset : 1625494_at
Accessions : protein= NP_611118;, nucleotide= NM_137274;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from elect
FlyMine data for FBgn0034114.
BDGP gene expression has embryonic in situ data for CG4282: 11 pix of staining in 7 body parts.
Homophila reports that CG4282 is a close match (2e-11) to human gene NIL2A;TCF8;ZEB1 (NP_110378), a gene associated with Corneal dystrophy, posterior polymorphous, 3, 609141 (3).
BioGrid reports that CG4282 interacts with CG8597 .
TRiP has 1 RNAi stocks for FBgn0034114 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 ± 24 of 4 0.70None
Head34 ± 24 of 4 0.40Down
Eye25 ± 14 of 4 0.30Down
Thoracicoabdominal ganglion46 ± 24 of 4 0.60Down
Salivary gland66 ± 54 of 4 0.79None
Crop48 ± 04 of 4 0.60Down
Midgut34 ± 10 of 4 0.40Down
Tubule54 ± 34 of 4 0.70Down
Hindgut56 ± 24 of 4 0.70Down
Heart19 ± 14 of 4 0.24Down
Fat body27 ± 24 of 4 0.32Down
Ovary198 ± 64 of 4 2.40Up
Testis17 ± 14 of 4 0.20Down
Male accessory glands54 ± 64 of 4 0.60Down
Virgin spermatheca38 ± 34 of 4 0.47Down
Mated spermatheca38 ± 24 of 4 0.45Down
Adult carcass25 ± 53 of 4 0.30Down
Larval CNS131 ± 44 of 4 1.57Up
Larval Salivary gland69 ± 34 of 4 0.83None
Larval midgut40 ± 30 of 4 0.49Down
Larval tubule49 ± 34 of 4 0.60Down
Larval hindgut37 ± 34 of 4 0.44Down
Larval fat body47 ± 54 of 4 0.60Down
Larval trachea47 ± 24 of 4 0.56Down
Larval carcass40 ± 24 of 4 0.49Down
S2 cells (growing)78 ± 54 of 4 0.94None
Whole fly83 ± 64 of 4

Looking for FBgn0034114. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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