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FlyAtlas: the Drosophila gene expression atlas

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Latest news: 16/4/2014: We have just migrated to a new server (the old one ran XP!).
Latest news: Please report unexpected behaviours to julian.dow @ glasgow. ac. uk
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034121 through 18771 annotations produced 2 hits



(CG6262):

Annotation Number : CG6262
Flybase ID : FBgn0034121
Gbrowse : chr2R:12247234-12250975 (+) // 99.88 //
Probeset : 1631316_a_at
Accessions : protein= NP_001033951; /// NP_611123; /// NP_725574; /// NP_725575; /// NP_788376;, nucleotide= NM_001038862; /// NM_137279; /// NM_166172; /// NM_166173; /// NM_176196;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004555 // alpha
FlyMine data for FBgn0034121.
VDRC has 2 RNAi stocks for FBgn0034121 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye2 10 of 4 0.03Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland5 00 of 4 0.06Down
Crop6 20 of 4 0.10Down
Midgut3 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut4 10 of 4 0.10Down
Heart5 10 of 4 0.06Down
Fat body8 40 of 4 0.09Down
Ovary1 00 of 4 0.00Down
Testis1211 114 of 413.30Up
Male accessory glands6 30 of 4 0.10Down
Virgin spermatheca12 30 of 4 0.13Down
Mated spermatheca14 20 of 4 0.16Down
Adult carcass13 40 of 4 0.10Down
Larval CNS4 10 of 4 0.05Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut2 00 of 4 0.03Down
Larval tubule3 20 of 4 0.00Down
Larval hindgut3 10 of 4 0.04Down
Larval fat body89 463 of 4 1.00None
Larval trachea3 30 of 4 0.04Down
Larval carcass3 10 of 4 0.03Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly91 24 of 4



(CG6262):

Annotation Number : CG6262
Flybase ID : FBgn0034121
Gbrowse : chr2R:12247234-12250857 (+) // 100.0 //
Probeset : 1629890_a_at
Accessions : protein= NP_001033951; /// NP_611123; /// NP_725574; /// NP_725575; /// NP_788376;, nucleotide= NM_001038862; /// NM_137279; /// NM_166172; /// NM_166173; /// NM_176196;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004555 // alpha
FlyMine data for FBgn0034121.
VDRC has 2 RNAi stocks for FBgn0034121 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.30Down
Head4 20 of 4 0.30Down
Eye1 00 of 4 0.10Down
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland6 30 of 4 0.46None
Crop2 10 of 4 0.20Down
Midgut3 10 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut3 10 of 4 0.20Down
Heart4 10 of 4 0.29Down
Fat body4 30 of 4 0.29Down
Ovary3 00 of 4 0.20Down
Testis104 84 of 4 7.10Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.23Down
Mated spermatheca6 20 of 4 0.41Down
Adult carcass5 20 of 4 0.40Down
Larval CNS1 00 of 4 0.08Down
Larval Salivary gland3 10 of 4 0.21Down
Larval midgut1 00 of 4 0.11Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut2 10 of 4 0.16Down
Larval fat body22 71 of 4 1.50None
Larval trachea0 00 of 4 0.04Down
Larval carcass0 00 of 4 0.07Down
S2 cells (growing)1 00 of 4 0.12Down
Whole fly14 23 of 4

Looking for FBgn0034121. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime