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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034126 through 18771 annotations produced 1 hits



(CG4398):

Annotation Number : CG4398
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034126
Gbrowse : chr2R:12319677-12320637 (+) // 100.0 //
Probeset : 1632975_at
Accessions : protein= NP_611126;, nucleotide= NM_137282;
FlyMine data for FBgn0034126.
BioGrid reports that CG4398 interacts with CG9881 .
VDRC has 2 RNAi stocks for FBgn0034126 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 24 of 4 0.20Down
Head80 ± 44 of 4 1.00None
Eye22 ± 34 of 4 0.29Down
Thoracicoabdominal ganglion11 ± 14 of 4 0.20Down
Salivary gland8 ± 21 of 4 0.11Down
Crop9 ± 12 of 4 0.10Down
Midgut5 ± 02 of 4 0.10Down
Tubule10 ± 13 of 4 0.10Down
Hindgut10 ± 04 of 4 0.10Down
Heart295 ± 124 of 4 3.80Up
Fat body220 ± 174 of 4 2.84Up
Ovary79 ± 84 of 4 1.00None
Testis153 ± 44 of 4 2.00Up
Male accessory glands44 ± 74 of 4 0.60Down
Virgin spermatheca201 ± 184 of 4 2.60Up
Mated spermatheca215 ± 184 of 4 2.77Up
Adult carcass150 ± 74 of 4 1.90Up
Larval CNS84 ± 54 of 4 1.08None
Larval Salivary gland41 ± 44 of 4 0.53Down
Larval midgut6 ± 11 of 4 0.08Down
Larval tubule36 ± 34 of 4 0.50Down
Larval hindgut6 ± 14 of 4 0.09Down
Larval fat body661 ± 714 of 4 8.50Up
Larval trachea18 ± 54 of 4 0.23Down
Larval carcass19 ± 14 of 4 0.25Down
S2 cells (growing)246 ± 84 of 4 3.17Up
Whole fly77 ± 64 of 4

Looking for FBgn0034126. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime