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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034128 through 18771 annotations produced 1 hits



(CG4409):

Annotation Number : CG4409
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034128
Gbrowse : chr2R:12330733-12331898 (+) // 100.0 //
Probeset : 1638194_at
Accessions : protein= NP_001097337;, nucleotide= NM_001103867;
FlyMine data for FBgn0034128.
VDRC has 3 RNAi stocks for FBgn0034128 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1394 ± 444 of 478.80Up
Head453 ± 244 of 425.60Up
Eye31 ± 04 of 4 1.77Up
Thoracicoabdominal ganglion160 ± 84 of 4 9.10Up
Salivary gland20 ± 31 of 4 1.14None
Crop8 ± 21 of 4 0.50None
Midgut14 ± 41 of 4 0.80None
Tubule10 ± 10 of 4 0.60Down
Hindgut17 ± 31 of 4 1.00None
Heart6 ± 10 of 4 0.38Down
Fat body14 ± 50 of 4 0.81None
Ovary7 ± 10 of 4 0.40Down
Testis11 ± 13 of 4 0.70None
Male accessory glands10 ± 21 of 4 0.60None
Virgin spermatheca9 ± 20 of 4 0.52None
Mated spermatheca15 ± 30 of 4 0.86None
Adult carcass14 ± 30 of 4 0.80None
Larval CNS653 ± 244 of 436.89Up
Larval Salivary gland20 ± 11 of 4 1.16None
Larval midgut11 ± 10 of 4 0.67None
Larval tubule12 ± 11 of 4 0.70None
Larval hindgut11 ± 03 of 4 0.66None
Larval fat body25 ± 30 of 4 1.40None
Larval trachea4 ± 31 of 4 0.27Down
Larval carcass28 ± 14 of 4 1.59Up
S2 cells (growing)30 ± 14 of 4 1.71Up
Whole fly17 ± 34 of 4

Looking for FBgn0034128. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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