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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034129 through 18771 annotations produced 1 hits


Annotation Number : CG15925
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034129
Gbrowse : chr2R:12333490-12335019 (+) // 100.0 //
Probeset : 1629838_at
Accessions : protein= NP_725583;, nucleotide= NM_166177;
FlyMine data for FBgn0034129.
VDRC has 1 RNAi stocks for FBgn0034129 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye1 00 of 4 0.08Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland2 00 of 4 0.09Down
Crop2 10 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut1 00 of 4 0.10Down
Heart0 00 of 4 0.02Down
Fat body0 00 of 4 0.04Down
Ovary0 00 of 4 0.00Down
Testis345 164 of 416.40Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.05Down
Mated spermatheca0 00 of 4 0.03Down
Adult carcass2 00 of 4 0.10Down
Larval CNS1 10 of 4 0.07Down
Larval Salivary gland1 00 of 4 0.05Down
Larval midgut1 00 of 4 0.05Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.05Down
Larval fat body25 102 of 4 1.20None
Larval trachea0 00 of 4 0.04Down
Larval carcass0 00 of 4 0.03Down
S2 cells (growing)0 00 of 4 0.04Down
Whole fly21 14 of 4

Looking for FBgn0034129. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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