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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034137 through 18771 annotations produced 1 hits



(CG4945):

Annotation Number : CG4945
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034137
Gbrowse : chr2R:12453551-12457627 (+) // 100.0 //
Probeset : 1639437_s_at
Accessions : protein= NP_725590; /// NP_788382; /// NP_788383;, nucleotide= NM_166182; /// NM_176202; /// NM_176203;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0034137.
BDGP gene expression has embryonic in situ data for CG4945: 11 pix of staining in 3 body parts.
Homophila reports that CG4945 is a close match (1e-12) to human gene PKCC;PKCG;PRKCG;SCA14 (NP_002730), a gene associated with Spinocerebellar ataxia 14, 605361 (3).
VDRC has 1 RNAi stocks for FBgn0034137 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 20 of 4 0.20Down
Head23 24 of 4 0.80None
Eye5 10 of 4 0.18Down
Thoracicoabdominal ganglion12 22 of 4 0.40Down
Salivary gland6 10 of 4 0.22Down
Crop143 24 of 4 4.90Up
Midgut5 20 of 4 0.20Down
Tubule2 00 of 4 0.10Down
Hindgut36 24 of 4 1.20None
Heart28 34 of 4 0.98None
Fat body1 00 of 4 0.06Down
Ovary2 00 of 4 0.10Down
Testis6 02 of 4 0.20Down
Male accessory glands23 50 of 4 0.80None
Virgin spermatheca1 00 of 4 0.04Down
Mated spermatheca2 10 of 4 0.09Down
Adult carcass132 74 of 4 4.50Up
Larval CNS1 10 of 4 0.05Down
Larval Salivary gland12 31 of 4 0.42Down
Larval midgut4 10 of 4 0.13Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut38 14 of 4 1.32Up
Larval fat body6 10 of 4 0.20Down
Larval trachea4 30 of 4 0.14Down
Larval carcass59 24 of 4 2.03Up
S2 cells (growing)1 00 of 4 0.06Down
Whole fly29 24 of 4

Looking for FBgn0034137. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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