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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034140 through 18771 annotations produced 1 hits



(CG8317):

Annotation Number : CG8317
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034140
Gbrowse : chr2R:12462082-12464087 (-) // 100.0 //
Probeset : 1631225_at
Accessions : protein= NP_611138;, nucleotide= NM_137294;
FlyMine data for FBgn0034140.
BDGP gene expression has embryonic in situ data for CG8317: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034140 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 14 of 4 0.10Down
Head923 ± 914 of 4 2.50Up
Eye468 ± 934 of 4 1.27None
Thoracicoabdominal ganglion23 ± 64 of 4 0.10Down
Salivary gland17 ± 70 of 4 0.05Down
Crop33 ± 84 of 4 0.10Down
Midgut16 ± 34 of 4 0.00Down
Tubule36 ± 73 of 4 0.10Down
Hindgut246 ± 314 of 4 0.70Down
Heart1892 ± 2244 of 4 5.11Up
Fat body2896 ± 2714 of 4 7.81Up
Ovary6 ± 03 of 4 0.00Down
Testis28 ± 44 of 4 0.10Down
Male accessory glands7 ± 10 of 4 0.00Down
Virgin spermatheca3602 ± 1494 of 4 9.72Up
Mated spermatheca2813 ± 1544 of 4 7.59Up
Adult carcass1824 ± 894 of 4 4.90Up
Larval CNS6 ± 33 of 4 0.02Down
Larval Salivary gland53 ± 94 of 4 0.14Down
Larval midgut41 ± 44 of 4 0.11Down
Larval tubule75 ± 114 of 4 0.20Down
Larval hindgut182 ± 144 of 4 0.49Down
Larval fat body6073 ± 6194 of 416.40Up
Larval trachea265 ± 264 of 4 0.71Down
Larval carcass2134 ± 1854 of 4 5.76Up
S2 cells (growing)10 ± 13 of 4 0.03Down
Whole fly370 ± 334 of 4

Looking for FBgn0034140. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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