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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034141 through 18771 annotations produced 1 hits



dolichol kinase (CG8311):

Annotation Number : CG8311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034141
Gbrowse : chr2R:12474549-12476673 (-) // 100.0 //
Probeset : 1635502_at
Accessions : protein= NP_611139;, nucleotide= NM_137295;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004168 // dolichol kinase activity // inferred from sequence or structural similarity /// 0004168 // dolichol kinase ac
FlyMine data for FBgn0034141.
BDGP gene expression has embryonic in situ data for CG8311: 4 pix of staining in 1 body parts.
Homophila reports that CG8311 is a close match (9e-39) to human gene DK1;KIAA1094;SEC59;TMEM15 (NP_055723), a gene associated with Congenital disorder of glycosylation, type Im, 610768 (3).
TRiP has 1 RNAi stocks for FBgn0034141 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034141 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 ± 64 of 4 0.60Down
Head206 ± 104 of 4 1.00None
Eye174 ± 114 of 4 0.81Down
Thoracicoabdominal ganglion115 ± 44 of 4 0.50Down
Salivary gland124 ± 34 of 4 0.58Down
Crop132 ± 54 of 4 0.60Down
Midgut594 ± 184 of 4 2.80Up
Tubule200 ± 114 of 4 0.90None
Hindgut166 ± 34 of 4 0.80Down
Heart468 ± 194 of 4 2.17Up
Fat body934 ± 1114 of 4 4.33Up
Ovary234 ± 64 of 4 1.10None
Testis45 ± 14 of 4 0.20Down
Male accessory glands123 ± 74 of 4 0.60Down
Virgin spermatheca646 ± 264 of 4 3.00Up
Mated spermatheca848 ± 174 of 4 3.93Up
Adult carcass313 ± 144 of 4 1.50Up
Larval CNS153 ± 64 of 4 0.71Down
Larval Salivary gland89 ± 34 of 4 0.41Down
Larval midgut466 ± 294 of 4 2.16Up
Larval tubule126 ± 54 of 4 0.60Down
Larval hindgut98 ± 34 of 4 0.45Down
Larval fat body221 ± 204 of 4 1.00None
Larval trachea120 ± 104 of 4 0.56Down
Larval carcass60 ± 24 of 4 0.28Down
S2 cells (growing)299 ± 54 of 4 1.39Up
Whole fly215 ± 104 of 4

Looking for FBgn0034141. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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