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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034142 through 18771 annotations produced 1 hits



(CG8306):

Annotation Number : CG8306
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034142
Gbrowse : chr2R:12477023-12482218 (-) // 100.0 //
Probeset : 1624760_at
Accessions : protein= NP_611140;, nucleotide= NM_137296;
Pathway : 0005777 // peroxisome // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electr
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0034142.
BDGP gene expression has embryonic in situ data for CG8306: 18 pix of staining in 17 body parts.
VDRC has 3 RNAi stocks for FBgn0034142 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 04 of 4 0.10Down
Head461 ± 144 of 4 3.30Up
Eye271 ± 24 of 4 1.93Up
Thoracicoabdominal ganglion14 ± 13 of 4 0.10Down
Salivary gland765 ± 164 of 4 5.44Up
Crop3324 ± 1014 of 423.60Up
Midgut271 ± 74 of 4 1.90Up
Tubule599 ± 424 of 4 4.30Up
Hindgut1081 ± 284 of 4 7.70Up
Heart67 ± 64 of 4 0.48Down
Fat body8 ± 60 of 4 0.06Down
Ovary18 ± 14 of 4 0.10Down
Testis33 ± 14 of 4 0.20Down
Male accessory glands319 ± 94 of 4 2.30Up
Virgin spermatheca103 ± 64 of 4 0.74Down
Mated spermatheca96 ± 124 of 4 0.69Down
Adult carcass288 ± 204 of 4 2.00Up
Larval CNS94 ± 34 of 4 0.67Down
Larval Salivary gland763 ± 144 of 4 5.43Up
Larval midgut177 ± 154 of 4 1.26None
Larval tubule738 ± 174 of 4 5.20Up
Larval hindgut780 ± 104 of 4 5.55Up
Larval fat body36 ± 24 of 4 0.30Down
Larval trachea598 ± 374 of 4 4.25Up
Larval carcass700 ± 364 of 4 4.98Up
S2 cells (growing)313 ± 44 of 4 2.22Up
Whole fly140 ± 54 of 4

Looking for FBgn0034142. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime