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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034144 through 18771 annotations produced 1 hits



CG5089s (CG5089):

Annotation Number : CG5089
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034144
Gbrowse : chr2R:12486252-12487920 (+) // 100.0 //
Probeset : 1631991_at
Accessions : protein= NP_611142;, nucleotide= NM_137298;
FlyMine data for FBgn0034144.
BDGP gene expression has embryonic in situ data for CG5089: 4 pix of staining in 1 body parts.
BioGrid reports that CG5089 interacts with CG5303 CG8907 CG9448 .
VDRC has 3 RNAi stocks for FBgn0034144 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 20 of 4 0.00Down
Head8 ± 40 of 4 0.00Down
Eye3 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland15 ± 21 of 4 0.03Down
Crop5 ± 10 of 4 0.00Down
Midgut4 ± 10 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.00Down
Fat body4 ± 20 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis3230 ± 1614 of 4 5.50Up
Male accessory glands164 ± 44 of 4 0.30Down
Virgin spermatheca3 ± 10 of 4 0.01Down
Mated spermatheca5 ± 20 of 4 0.01Down
Adult carcass16 ± 42 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.00Down
Larval midgut11 ± 30 of 4 0.02Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.00Down
Larval fat body509 ± 2654 of 4 0.90None
Larval trachea16 ± 232 of 4 0.03Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly584 ± 284 of 4

Looking for FBgn0034144. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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