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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034156 through 18771 annotations produced 1 hits



(CG5348):

Annotation Number : CG5348
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034156
Gbrowse : chr2R:12654356-12656629 (+) // 100.0 //
Probeset : 1640152_at
Accessions : protein= NP_611156;, nucleotide= NM_137312;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0034156.
VDRC has 2 RNAi stocks for FBgn0034156 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 13 of 4 0.70Down
Head3 ± 10 of 4 0.30Down
Eye7 ± 12 of 4 0.64Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.40Down
Salivary gland14 ± 20 of 4 1.19None
Crop4 ± 10 of 4 0.40Down
Midgut9 ± 11 of 4 0.80None
Tubule7 ± 01 of 4 0.60Down
Hindgut3 ± 10 of 4 0.30Down
Heart2 ± 10 of 4 0.20Down
Fat body9 ± 20 of 4 0.83None
Ovary2 ± 00 of 4 0.20Down
Testis104 ± 54 of 4 8.80Up
Male accessory glands7 ± 01 of 4 0.70Down
Virgin spermatheca11 ± 11 of 4 0.93None
Mated spermatheca11 ± 10 of 4 1.00None
Adult carcass6 ± 20 of 4 0.60None
Larval CNS7 ± 24 of 4 0.65Down
Larval Salivary gland8 ± 20 of 4 0.72None
Larval midgut4 ± 10 of 4 0.41Down
Larval tubule4 ± 13 of 4 0.40Down
Larval hindgut4 ± 01 of 4 0.35Down
Larval fat body27 ± 123 of 4 2.40None
Larval trachea4 ± 22 of 4 0.42Down
Larval carcass8 ± 11 of 4 0.70None
S2 cells (growing)2 ± 00 of 4 0.22Down
Whole fly11 ± 01 of 4

Looking for FBgn0034156. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime