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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034157 through 18771 annotations produced 2 hits



resilin /// Vitamin-K epoxide reductase (resilin /// Vkor):

Annotation Number : HDC06808
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034157 /// FBgn0053544
Gbrowse : chr2R:12665869-12667681 (+) // 100.0 //
Probeset : 1628209_at
Accessions : protein= NP_001014533; /// NP_611157; /// NP_995860;, nucleotide= NM_001014533; /// NM_137313; /// NM_206138;
Pathway : 0005576 // extracellular region // non-traceable author statement
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0016491
FlyMine data for FBgn0034157 /// FBgn0053544.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 13 of 4 2.80Up
Head8 ± 13 of 4 2.00None
Eye1 ± 00 of 4 0.47None
Thoracicoabdominal ganglion14 ± 11 of 4 3.60Up
Salivary gland7 ± 30 of 4 1.74None
Crop6 ± 10 of 4 1.50None
Midgut4 ± 10 of 4 1.00None
Tubule6 ± 00 of 4 1.50Up
Hindgut7 ± 00 of 4 1.70None
Heart1 ± 00 of 4 0.24None
Fat body6 ± 10 of 4 1.44None
Ovary2 ± 00 of 4 0.70None
Testis8 ± 03 of 4 2.00None
Male accessory glands6 ± 00 of 4 1.40None
Virgin spermatheca2 ± 00 of 4 0.54None
Mated spermatheca3 ± 10 of 4 0.78None
Adult carcass5 ± 20 of 4 1.30None
Larval CNS10 ± 14 of 4 2.43Up
Larval Salivary gland5 ± 10 of 4 1.25None
Larval midgut9 ± 10 of 4 2.31Up
Larval tubule3 ± 10 of 4 0.70None
Larval hindgut3 ± 10 of 4 0.83None
Larval fat body6 ± 00 of 4 1.60None
Larval trachea2 ± 10 of 4 0.60None
Larval carcass4 ± 10 of 4 1.08None
S2 cells (growing)3 ± 00 of 4 0.89None
Whole fly4 ± 10 of 4



resilin (resilin):

Annotation Number : CG15920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034157
Gbrowse : chr2R:12668052-12670381 (+) // 100.0 //
Probeset : 1625601_at
Accessions : protein= NP_611157; /// NP_995860;, nucleotide= NM_137313; /// NM_206138;
Pathway : 0005576 // extracellular region // non-traceable author statement
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0030023
FlyMine data for FBgn0034157.
BioGrid reports that CG15920 interacts with CG7660 .
VDRC has 1 RNAi stocks for FBgn0034157 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 20 of 4 1.40None
Head4 ± 00 of 4 1.50None
Eye3 ± 10 of 4 1.01None
Thoracicoabdominal ganglion5 ± 00 of 4 1.70None
Salivary gland10 ± 40 of 4 3.13None
Crop3 ± 10 of 4 1.20None
Midgut6 ± 30 of 4 2.00None
Tubule2 ± 00 of 4 0.80None
Hindgut1 ± 10 of 4 0.60None
Heart1 ± 00 of 4 0.43None
Fat body9 ± 40 of 4 2.91Up
Ovary5 ± 00 of 4 1.60None
Testis3 ± 00 of 4 1.20None
Male accessory glands1 ± 00 of 4 0.50None
Virgin spermatheca6 ± 20 of 4 2.14None
Mated spermatheca8 ± 00 of 4 2.57Up
Adult carcass9 ± 30 of 4 3.10None
Larval CNS4 ± 20 of 4 1.27None
Larval Salivary gland5 ± 10 of 4 1.68None
Larval midgut8 ± 30 of 4 2.56None
Larval tubule3 ± 10 of 4 1.10None
Larval hindgut6 ± 00 of 4 1.94None
Larval fat body4 ± 10 of 4 1.30None
Larval trachea5 ± 40 of 4 1.64None
Larval carcass5 ± 10 of 4 1.57None
S2 cells (growing)7 ± 10 of 4 2.50Up
Whole fly3 ± 10 of 4

Looking for FBgn0034157. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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