FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034158 through 18771 annotations produced 1 hits

(CG5522):

Annotation Number : CG5522
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034158
Gbrowse : chr2R:12671195-12679981 (+) // 100.0 //
Probeset : 1632545_s_at
Accessions : protein= NP_611158; /// NP_725613; /// NP_725614; /// NP_725615; /// NP_725616; /// NP_725617;, nucleotide= NM_137314; /// NM_166193; /// NM_166194; /// NM_166195; /// NM_166196; /// NM_166197;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005085 //
FlyMine data for FBgn0034158.
BDGP gene expression has embryonic in situ data for CG5522: 19 pix of staining in 15 body parts.
Homophila reports that CG5522 is a close match (1e-24) to human gene GF1;GINGF;HGF;NS4;SOS1 (NP_005624), a gene associated with Fibromatosis, gingival, 135300 (3);Noonan syndrome 4, 610733 (3).
BioGrid reports that CG5522 interacts with CG5709 CG6363 CG8936 CG9784 CG9902 .
TRiP has 1 RNAi stocks for FBgn0034158 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034158 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	308 ± 8	4 of 4	2.10	Up
Head	173 ± 6	4 of 4	1.20	Up
Eye	194 ± 20	4 of 4	1.34	None
Thoracicoabdominal ganglion	267 ± 6	4 of 4	1.80	Up
Salivary gland	81 ± 6	4 of 4	0.56	Down
Crop	513 ± 17	4 of 4	3.50	Up
Midgut	104 ± 10	4 of 4	0.70	Down
Tubule	138 ± 11	4 of 4	1.00	None
Hindgut	224 ± 4	4 of 4	1.50	Up
Heart	264 ± 6	4 of 4	1.82	Up
Fat body	100 ± 29	4 of 4	0.69	None
Ovary	329 ± 7	4 of 4	2.30	Up
Testis	25 ± 2	4 of 4	0.20	Down
Male accessory glands	78 ± 3	4 of 4	0.50	Down
Virgin spermatheca	68 ± 2	4 of 4	0.47	Down
Mated spermatheca	123 ± 9	4 of 4	0.85	None
Adult carcass	92 ± 3	4 of 4	0.60	Down
Larval CNS	327 ± 24	4 of 4	2.25	Up
Larval Salivary gland	48 ± 3	4 of 4	0.33	Down
Larval midgut	113 ± 4	4 of 4	0.78	Down
Larval tubule	68 ± 7	4 of 4	0.50	Down
Larval hindgut	131 ± 6	4 of 4	0.90	None
Larval fat body	349 ± 28	4 of 4	2.40	Up
Larval trachea	75 ± 13	4 of 4	0.52	Down
Larval carcass	111 ± 16	4 of 4	0.76	None
S2 cells (growing)	551 ± 15	4 of 4	3.79	Up
Whole fly	145 ± 3	4 of 4

Looking for FBgn0034158. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720