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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034159 through 18771 annotations produced 1 hits



(CG15615):

Annotation Number : CG15615
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034159
Gbrowse : chr2R:12680812-12682494 (-) // 100.0 //
Probeset : 1627481_at
Accessions : protein= NP_611159;, nucleotide= NM_137315;
Interpro : 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046914 // transition metal ion binding //
FlyMine data for FBgn0034159.
BioGrid reports that CG15615 interacts with CG3195 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.50None
Head1 ± 00 of 4 0.80None
Eye0 ± 00 of 4 0.75None
Thoracicoabdominal ganglion0 ± 00 of 4 0.50None
Salivary gland6 ± 30 of 4 4.71None
Crop0 ± 00 of 4 0.60None
Midgut1 ± 00 of 4 0.80None
Tubule1 ± 00 of 4 1.20None
Hindgut16 ± 31 of 413.30Up
Heart1 ± 00 of 4 1.43None
Fat body2 ± 10 of 4 1.57None
Ovary0 ± 00 of 4 0.40None
Testis1 ± 00 of 4 1.00None
Male accessory glands47 ± 54 of 437.20Up
Virgin spermatheca1 ± 00 of 4 1.39None
Mated spermatheca1 ± 00 of 4 0.88None
Adult carcass2 ± 00 of 4 1.80None
Larval CNS0 ± 00 of 4 0.67None
Larval Salivary gland6 ± 10 of 4 4.92Up
Larval midgut0 ± 00 of 4 0.51None
Larval tubule0 ± 00 of 4 0.40None
Larval hindgut575 ± 1374 of 4451.45Up
Larval fat body0 ± 00 of 4 0.60None
Larval trachea0 ± 00 of 4 0.33None
Larval carcass0 ± 00 of 4 0.75None
S2 cells (growing)0 ± 00 of 4 0.65None
Whole fly1 ± 00 of 4

Looking for FBgn0034159. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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