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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034172 through 18771 annotations produced 1 hits



(CG6665):

Annotation Number : CG6665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034172
Gbrowse : chr2R:12845006-12846436 (+) // 100.0 //
Probeset : 1640744_a_at
Accessions : protein= NP_611171; /// NP_725632;, nucleotide= NM_137327; /// NM_166204;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034172.
BDGP gene expression has embryonic in situ data for CG6665: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034172 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 ± 24 of 4 1.70Up
Head72 ± 34 of 4 1.20None
Eye143 ± 84 of 4 2.42Up
Thoracicoabdominal ganglion87 ± 24 of 4 1.50Up
Salivary gland87 ± 74 of 4 1.48Up
Crop52 ± 34 of 4 0.90None
Midgut110 ± 44 of 4 1.90Up
Tubule62 ± 14 of 4 1.10None
Hindgut75 ± 44 of 4 1.30Up
Heart119 ± 14 of 4 2.02Up
Fat body108 ± 174 of 4 1.83Up
Ovary69 ± 24 of 4 1.20None
Testis22 ± 14 of 4 0.40Down
Male accessory glands51 ± 24 of 4 0.90None
Virgin spermatheca57 ± 04 of 4 0.97None
Mated spermatheca56 ± 24 of 4 0.94None
Adult carcass74 ± 74 of 4 1.30None
Larval CNS70 ± 44 of 4 1.19None
Larval Salivary gland88 ± 84 of 4 1.48Up
Larval midgut148 ± 64 of 4 2.50Up
Larval tubule132 ± 44 of 4 2.20Up
Larval hindgut69 ± 44 of 4 1.17None
Larval fat body95 ± 114 of 4 1.60Up
Larval trachea72 ± 94 of 4 1.22None
Larval carcass63 ± 44 of 4 1.07None
S2 cells (growing)112 ± 14 of 4 1.89Up
Whole fly59 ± 44 of 4

Looking for FBgn0034172. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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