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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034175 through 18771 annotations produced 1 hits



prenyl protease type I (ste24b):

Annotation Number : CG9001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034175
Gbrowse : chr2R:12886114-12887631 (-) // 100.0 //
Probeset : 1639303_at
Accessions : protein= NP_611174;, nucleotide= NM_137330;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0034175.
Homophila reports that CG9001 is a close match (6e-40) to human gene FACE1;MADB;STE24;ZMPSTE24 (NP_005848), a gene associated with Mandibuloacral dysplasia with type B lipodystrophy, 608612 (3);Restrictive dermopathy, lethal, 275210 (3).
VDRC has 3 RNAi stocks for FBgn0034175 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 24 of 4 0.30Down
Head9 ± 02 of 4 0.20Down
Eye5 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion22 ± 24 of 4 0.40Down
Salivary gland17 ± 40 of 4 0.29Down
Crop9 ± 20 of 4 0.20Down
Midgut10 ± 31 of 4 0.20Down
Tubule13 ± 11 of 4 0.20Down
Hindgut9 ± 10 of 4 0.20Down
Heart4 ± 11 of 4 0.07Down
Fat body7 ± 21 of 4 0.12Down
Ovary3 ± 11 of 4 0.10Down
Testis729 ± 14 of 412.20Up
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca8 ± 10 of 4 0.15Down
Mated spermatheca8 ± 10 of 4 0.14Down
Adult carcass14 ± 21 of 4 0.20Down
Larval CNS19 ± 24 of 4 0.33Down
Larval Salivary gland10 ± 02 of 4 0.18Down
Larval midgut10 ± 10 of 4 0.18Down
Larval tubule6 ± 22 of 4 0.10Down
Larval hindgut8 ± 10 of 4 0.14Down
Larval fat body47 ± 213 of 4 0.80None
Larval trachea15 ± 44 of 4 0.25Down
Larval carcass9 ± 20 of 4 0.15Down
S2 cells (growing)28 ± 24 of 4 0.47Down
Whole fly59 ± 34 of 4

Looking for FBgn0034175. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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