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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034176 through 18771 annotations produced 1 hits



CG9000 (ste24a):

Annotation Number : CG9000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034176
Gbrowse : chr2R:12887744-12889431 (-) // 100.0 //
Probeset : 1624905_at
Accessions : protein= NP_611175;, nucleotide= NM_137331;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0034176.
BDGP gene expression has embryonic in situ data for CG9000: 8 pix of staining in 1 body parts.
Homophila reports that CG9000 is a close match (3e-96) to human gene FACE1;MADB;STE24;ZMPSTE24 (NP_005848), a gene associated with Mandibuloacral dysplasia with type B lipodystrophy, 608612 (3);Restrictive dermopathy, lethal, 275210 (3).
VDRC has 5 RNAi stocks for FBgn0034176 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain262 ± 84 of 4 1.10None
Head220 ± 54 of 4 0.90Down
Eye265 ± 264 of 4 1.08None
Thoracicoabdominal ganglion262 ± 114 of 4 1.10None
Salivary gland485 ± 284 of 4 1.98Up
Crop178 ± 94 of 4 0.70Down
Midgut427 ± 224 of 4 1.70Up
Tubule404 ± 204 of 4 1.70Up
Hindgut260 ± 134 of 4 1.10None
Heart140 ± 64 of 4 0.57Down
Fat body176 ± 244 of 4 0.72Down
Ovary336 ± 54 of 4 1.40Up
Testis504 ± 244 of 4 2.10Up
Male accessory glands292 ± 114 of 4 1.20Up
Virgin spermatheca500 ± 164 of 4 2.04Up
Mated spermatheca563 ± 194 of 4 2.30Up
Adult carcass170 ± 54 of 4 0.70Down
Larval CNS476 ± 314 of 4 1.95Up
Larval Salivary gland655 ± 104 of 4 2.68Up
Larval midgut433 ± 304 of 4 1.77Up
Larval tubule432 ± 124 of 4 1.80Up
Larval hindgut346 ± 54 of 4 1.42Up
Larval fat body233 ± 294 of 4 1.00None
Larval trachea324 ± 284 of 4 1.33Up
Larval carcass221 ± 104 of 4 0.90None
S2 cells (growing)738 ± 84 of 4 3.01Up
Whole fly245 ± 74 of 4

Looking for FBgn0034176. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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