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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034177 through 18771 annotations produced 1 hits



(CG6796):

Annotation Number : CG6796
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034177
Gbrowse : chr2R:12889518-12891107 (+) // 100.0 //
Probeset : 1636295_at
Accessions : protein= NP_611176;, nucleotide= NM_137332;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0034177.
VDRC has 2 RNAi stocks for FBgn0034177 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 ± 24 of 4 1.40Up
Head33 ± 24 of 4 0.80None
Eye25 ± 34 of 4 0.63Down
Thoracicoabdominal ganglion59 ± 34 of 4 1.40Up
Salivary gland30 ± 31 of 4 0.74None
Crop36 ± 14 of 4 0.90None
Midgut30 ± 44 of 4 0.80None
Tubule25 ± 13 of 4 0.60Down
Hindgut28 ± 24 of 4 0.70Down
Heart31 ± 24 of 4 0.77Down
Fat body42 ± 64 of 4 1.04None
Ovary61 ± 14 of 4 1.50Up
Testis14 ± 13 of 4 0.30Down
Male accessory glands37 ± 03 of 4 0.90None
Virgin spermatheca45 ± 24 of 4 1.11None
Mated spermatheca47 ± 14 of 4 1.17None
Adult carcass28 ± 30 of 4 0.70Down
Larval CNS60 ± 34 of 4 1.49Up
Larval Salivary gland35 ± 04 of 4 0.86None
Larval midgut21 ± 21 of 4 0.52Down
Larval tubule30 ± 24 of 4 0.70Down
Larval hindgut43 ± 24 of 4 1.06None
Larval fat body28 ± 21 of 4 0.70Down
Larval trachea44 ± 44 of 4 1.08None
Larval carcass38 ± 10 of 4 0.94None
S2 cells (growing)38 ± 34 of 4 0.95None
Whole fly40 ± 34 of 4

Looking for FBgn0034177. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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