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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034180 through 18771 annotations produced 1 hits



(CG15609):

Annotation Number : CG15609
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034180
Gbrowse : chr2R:12895410-12903391 (-) // 100.0 //
Probeset : 1636391_at
Accessions : protein= NP_001137682; /// NP_001137683; /// NP_001137684; /// NP_611179; /// NP_995865; /// NP_995866;, nucleotide= NM_001144210; /// NM_001144211; /// NM_001144212; /// NM_137335; /// NM_206143; /// NM_206144;
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferr
FlyMine data for FBgn0034180.
Homophila reports that CG15609 is a close match (4e-12) to human gene SPTB (NP_001020029), a gene associated with Anemia, neonatal hemolytic, fatal and near-fatal (3);Elliptocytosis-3 (3);Spherocytosis-1 (3).
TRiP has 1 RNAi stocks for FBgn0034180 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034180 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain391 174 of 4 2.20Up
Head183 74 of 4 1.00None
Eye197 74 of 4 1.12None
Thoracicoabdominal ganglion322 54 of 4 1.80Up
Salivary gland173 24 of 4 0.99None
Crop249 104 of 4 1.40Up
Midgut188 54 of 4 1.10None
Tubule198 84 of 4 1.10Up
Hindgut252 74 of 4 1.40Up
Heart162 54 of 4 0.93None
Fat body221 234 of 4 1.26Up
Ovary158 24 of 4 0.90None
Testis42 34 of 4 0.20Down
Male accessory glands97 14 of 4 0.60Down
Virgin spermatheca164 74 of 4 0.94None
Mated spermatheca157 54 of 4 0.90None
Adult carcass358 144 of 4 2.00Up
Larval CNS349 584 of 4 1.99Up
Larval Salivary gland138 84 of 4 0.79Down
Larval midgut280 174 of 4 1.60Up
Larval tubule220 104 of 4 1.30Up
Larval hindgut322 124 of 4 1.84Up
Larval fat body229 174 of 4 1.30Up
Larval trachea152 34 of 4 0.87None
Larval carcass268 284 of 4 1.53Up
S2 cells (growing)334 104 of 4 1.91Up
Whole fly175 74 of 4

Looking for FBgn0034180. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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