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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034181 through 18771 annotations produced 1 hits



(CG8963):

Annotation Number : CG8963
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034181
Gbrowse : chr2R:12903839-12907002 (-) // 99.64 //
Probeset : 1630703_at
Accessions : protein= NP_001163171; /// NP_611180; /// NP_995867;, nucleotide= NM_001169700; /// NM_137336; /// NM_206145;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0034181.
BDGP gene expression has embryonic in situ data for CG8963: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0034181 available for purchase.
VDRC has 4 RNAi stocks for FBgn0034181 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain548 ± 74 of 4 0.90None
Head384 ± 44 of 4 0.70Down
Eye604 ± 184 of 4 1.03None
Thoracicoabdominal ganglion618 ± 54 of 4 1.10None
Salivary gland1118 ± 394 of 4 1.91Up
Crop602 ± 114 of 4 1.00None
Midgut434 ± 124 of 4 0.70Down
Tubule897 ± 174 of 4 1.50Up
Hindgut500 ± 54 of 4 0.90Down
Heart652 ± 154 of 4 1.11None
Fat body537 ± 484 of 4 0.92None
Ovary1037 ± 94 of 4 1.80Up
Testis578 ± 244 of 4 1.00None
Male accessory glands1106 ± 234 of 4 1.90Up
Virgin spermatheca754 ± 124 of 4 1.29Up
Mated spermatheca881 ± 244 of 4 1.50Up
Adult carcass525 ± 124 of 4 0.90None
Larval CNS905 ± 204 of 4 1.54Up
Larval Salivary gland2534 ± 1224 of 4 4.32Up
Larval midgut575 ± 334 of 4 0.98None
Larval tubule727 ± 114 of 4 1.20Up
Larval hindgut768 ± 274 of 4 1.31Up
Larval fat body688 ± 364 of 4 1.20None
Larval trachea1047 ± 544 of 4 1.79Up
Larval carcass976 ± 454 of 4 1.67Up
S2 cells (growing)591 ± 114 of 4 1.01None
Whole fly586 ± 224 of 4

Looking for FBgn0034181. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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