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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034191 through 18771 annotations produced 1 hits



(CG6984):

Annotation Number : CG6984
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034191
Gbrowse : chr2R:12979514-12980575 (+) // 100.0 //
Probeset : 1636153_at
Accessions : protein= NP_611187;, nucleotide= NM_137343;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004300 // enoyl-CoA hydratase activity // infe
FlyMine data for FBgn0034191.
BDGP gene expression has embryonic in situ data for CG6984: 8 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0034191 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034191 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 14 of 4 0.30Down
Head37 ± 14 of 4 0.70Down
Eye39 ± 94 of 4 0.69None
Thoracicoabdominal ganglion14 ± 32 of 4 0.20Down
Salivary gland13 ± 30 of 4 0.24Down
Crop37 ± 34 of 4 0.70Down
Midgut46 ± 14 of 4 0.80Down
Tubule153 ± 164 of 4 2.70Up
Hindgut30 ± 24 of 4 0.50Down
Heart86 ± 54 of 4 1.50Up
Fat body81 ± 84 of 4 1.42Up
Ovary122 ± 44 of 4 2.10Up
Testis7 ± 13 of 4 0.10Down
Male accessory glands23 ± 30 of 4 0.40Down
Virgin spermatheca100 ± 24 of 4 1.75Up
Mated spermatheca75 ± 24 of 4 1.32Up
Adult carcass43 ± 14 of 4 0.80Down
Larval CNS31 ± 94 of 4 0.55Down
Larval Salivary gland107 ± 84 of 4 1.88Up
Larval midgut33 ± 33 of 4 0.58Down
Larval tubule119 ± 104 of 4 2.10Up
Larval hindgut85 ± 44 of 4 1.48Up
Larval fat body72 ± 74 of 4 1.30None
Larval trachea111 ± 74 of 4 1.93Up
Larval carcass61 ± 74 of 4 1.06None
S2 cells (growing)67 ± 34 of 4 1.17None
Whole fly57 ± 24 of 4

Looking for FBgn0034191. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime