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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034194 through 18771 annotations produced 1 hits



(CG15611):

Annotation Number : CG15611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034194
Gbrowse : chr2R:12996351-13001866 (+) // 100.0 //
Probeset : 1633641_a_at
Accessions : protein= NP_611189; /// NP_725655;, nucleotide= NM_137345; /// NM_166218;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005089 // Rho guanyl-nucleotide exchange factor activity // inferred from electronic annotation /// 0005515 // protein
FlyMine data for FBgn0034194.
BDGP gene expression has embryonic in situ data for CG15611: 4 pix of staining in 1 body parts.
Homophila reports that CG15611 is a close match (1e-16) to human gene (NP_001019831), a gene associated with .
TRiP has 1 RNAi stocks for FBgn0034194 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034194 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 14 of 4 1.10None
Head71 ± 14 of 4 1.20None
Eye31 ± 34 of 4 0.52Down
Thoracicoabdominal ganglion51 ± 24 of 4 0.80None
Salivary gland258 ± 124 of 4 4.29Up
Crop397 ± 104 of 4 6.60Up
Midgut245 ± 154 of 4 4.10Up
Tubule171 ± 344 of 4 2.80Up
Hindgut437 ± 154 of 4 7.30Up
Heart150 ± 164 of 4 2.50Up
Fat body41 ± 34 of 4 0.68Down
Ovary22 ± 14 of 4 0.40Down
Testis32 ± 14 of 4 0.50Down
Male accessory glands76 ± 34 of 4 1.30Up
Virgin spermatheca35 ± 74 of 4 0.58Down
Mated spermatheca37 ± 24 of 4 0.62Down
Adult carcass118 ± 134 of 4 2.00Up
Larval CNS50 ± 94 of 4 0.83None
Larval Salivary gland141 ± 254 of 4 2.35Up
Larval midgut188 ± 64 of 4 3.12Up
Larval tubule101 ± 34 of 4 1.70Up
Larval hindgut256 ± 194 of 4 4.25Up
Larval fat body56 ± 44 of 4 0.90None
Larval trachea336 ± 214 of 4 5.58Up
Larval carcass64 ± 24 of 4 1.06None
S2 cells (growing)228 ± 64 of 4 3.79Up
Whole fly60 ± 44 of 4

Looking for FBgn0034194. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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