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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034195 through 18771 annotations produced 1 hits


Serpin 53F (Spn53F):

Annotation Number : CG10956
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034195
Gbrowse : chr2R:13010638-13011732 (-) // 100.0 //
Probeset : 1626687_at
Accessions : protein= NP_001036553;, nucleotide= NM_001043088;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0034195.
Homophila reports that CG10956 is a close match (2e-12) to human gene HC2;HCF2;SERPIND1 (NP_000176), a gene associated with Thrombophilia due to heparin cofactor II deficiency, 612356 (3).
VDRC has 2 RNAi stocks for FBgn0034195 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland8 ± 30 of 4 0.59None
Crop3 ± 00 of 4 0.30Down
Midgut14 ± 32 of 4 1.00None
Tubule2 ± 10 of 4 0.20Down
Hindgut2 ± 00 of 4 0.20Down
Heart3 ± 10 of 4 0.28Down
Fat body4 ± 20 of 4 0.30Down
Ovary1 ± 00 of 4 0.10Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands1305 ± 774 of 492.10Up
Virgin spermatheca2 ± 10 of 4 0.19Down
Mated spermatheca2 ± 10 of 4 0.19Down
Adult carcass6 ± 10 of 4 0.50Down
Larval CNS5 ± 10 of 4 0.35Down
Larval Salivary gland4 ± 10 of 4 0.33Down
Larval midgut6 ± 11 of 4 0.48Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.19Down
Larval fat body2 ± 10 of 4 0.20Down
Larval trachea1 ± 11 of 4 0.13Down
Larval carcass3 ± 10 of 4 0.25Down
S2 cells (growing)1 ± 00 of 4 0.08Down
Whole fly14 ± 13 of 4

Looking for FBgn0034195. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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