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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034198 through 18771 annotations produced 1 hits



(CG11400):

Annotation Number : CG11400
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034198
Gbrowse : chr2R:13021661-13022350 (+) // 100.0 //
Probeset : 1629375_at
Accessions : protein= NP_611193;, nucleotide= NM_137349;
FlyMine data for FBgn0034198.
BDGP gene expression has embryonic in situ data for CG11400: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034198 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 24 of 4 0.10Down
Head549 ± 314 of 4 3.30Up
Eye640 ± 524 of 4 3.87Up
Thoracicoabdominal ganglion25 ± 14 of 4 0.20Down
Salivary gland55 ± 73 of 4 0.34Down
Crop54 ± 34 of 4 0.30Down
Midgut399 ± 174 of 4 2.40Up
Tubule19 ± 22 of 4 0.10Down
Hindgut62 ± 04 of 4 0.40Down
Heart982 ± 634 of 4 5.94Up
Fat body1082 ± 964 of 4 6.54Up
Ovary9 ± 12 of 4 0.10Down
Testis37 ± 14 of 4 0.20Down
Male accessory glands63 ± 64 of 4 0.40Down
Virgin spermatheca878 ± 264 of 4 5.31Up
Mated spermatheca650 ± 254 of 4 3.93Up
Adult carcass642 ± 264 of 4 3.90Up
Larval CNS8 ± 32 of 4 0.05Down
Larval Salivary gland14 ± 40 of 4 0.09Down
Larval midgut14 ± 30 of 4 0.09Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut9 ± 10 of 4 0.05Down
Larval fat body11 ± 10 of 4 0.10Down
Larval trachea62 ± 84 of 4 0.38Down
Larval carcass13 ± 20 of 4 0.08Down
S2 cells (growing)341 ± 84 of 4 2.06Up
Whole fly165 ± 104 of 4

Looking for FBgn0034198. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime