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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034200 through 18771 annotations produced 1 hits



(CG11395):

Annotation Number : CG11395
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034200
Gbrowse : chr2R:13024745-13026337 (+) // 100.0 //
Probeset : 1638669_at
Accessions : protein= NP_611195;, nucleotide= NM_137351;
FlyMine data for FBgn0034200.
BDGP gene expression has embryonic in situ data for CG11395: 14 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0034200 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 64 of 4 0.10Down
Head1428 754 of 4 4.20Up
Eye756 1024 of 4 2.24Up
Thoracicoabdominal ganglion43 54 of 4 0.10Down
Salivary gland15 30 of 4 0.05Down
Crop34 64 of 4 0.10Down
Midgut2 10 of 4 0.00Down
Tubule31 53 of 4 0.10Down
Hindgut122 84 of 4 0.40Down
Heart2232 1174 of 4 6.60Up
Fat body3619 3274 of 410.70Up
Ovary1 00 of 4 0.00Down
Testis51 44 of 4 0.20Down
Male accessory glands5 10 of 4 0.00Down
Virgin spermatheca3226 624 of 4 9.54Up
Mated spermatheca2999 1034 of 4 8.87Up
Adult carcass1889 564 of 4 5.60Up
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland60 64 of 4 0.18Down
Larval midgut1 10 of 4 0.01Down
Larval tubule14 23 of 4 0.00Down
Larval hindgut65 134 of 4 0.19Down
Larval fat body4361 4124 of 412.90Up
Larval trachea29 174 of 4 0.09Down
Larval carcass22 44 of 4 0.07Down
S2 cells (growing)39 24 of 4 0.12Down
Whole fly338 234 of 4

Looking for FBgn0034200. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime