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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034202 through 18771 annotations produced 1 hits


Annotation Number : CG17287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034202
Gbrowse : chr2R:13044678-13045695 (-) // 100.0 //
Probeset : 1627166_at
Accessions : protein= NP_611197;, nucleotide= NM_137353;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0034202.
Homophila reports that CG17287 is a close match (1e-11) to human gene (NP_057116), a gene associated with .
VDRC has 2 RNAi stocks for FBgn0034202 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head1 00 of 4 0.10Down
Eye1 00 of 4 0.16Down
Thoracicoabdominal ganglion4 10 of 4 0.50Down
Salivary gland8 40 of 4 0.93None
Crop3 21 of 4 0.40None
Midgut2 10 of 4 0.30Down
Tubule3 00 of 4 0.40Down
Hindgut1 00 of 4 0.20Down
Heart0 00 of 4 0.04Down
Fat body3 20 of 4 0.37Down
Ovary2 00 of 4 0.20Down
Testis114 64 of 412.60Up
Male accessory glands8 20 of 4 0.90None
Virgin spermatheca2 10 of 4 0.31Down
Mated spermatheca2 10 of 4 0.31Down
Adult carcass5 10 of 4 0.60None
Larval CNS0 00 of 4 0.07Down
Larval Salivary gland3 00 of 4 0.40Down
Larval midgut1 00 of 4 0.19Down
Larval tubule2 10 of 4 0.30Down
Larval hindgut0 00 of 4 0.10Down
Larval fat body18 61 of 4 2.00None
Larval trachea1 10 of 4 0.12Down
Larval carcass2 00 of 4 0.25Down
S2 cells (growing)1 00 of 4 0.15Down
Whole fly9 12 of 4

Looking for FBgn0034202. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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