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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034204 through 18771 annotations produced 2 hits



(CG10953):

Annotation Number : CG10953
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034204
Gbrowse : chr2R:13052965-13054006 (-) // 100.0 //
Probeset : 1637634_at
Accessions : protein= NP_611199;, nucleotide= NM_137355;
FlyMine data for FBgn0034204.
BDGP gene expression has embryonic in situ data for CG10953: 23 pix of staining in 6 body parts.
VDRC has 4 RNAi stocks for FBgn0034204 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 20 of 4 0.10None
Head5 ± 00 of 4 0.10None
Eye25 ± 90 of 4 0.33None
Thoracicoabdominal ganglion6 ± 20 of 4 0.10None
Salivary gland11 ± 30 of 4 0.15None
Crop24 ± 80 of 4 0.30None
Midgut13 ± 10 of 4 0.20None
Tubule10 ± 10 of 4 0.10Down
Hindgut30 ± 70 of 4 0.40None
Heart3 ± 00 of 4 0.04None
Fat body51 ± 190 of 4 0.67None
Ovary4 ± 00 of 4 0.10None
Testis2 ± 00 of 4 0.00None
Male accessory glands23 ± 70 of 4 0.30None
Virgin spermatheca38 ± 100 of 4 0.50None
Mated spermatheca36 ± 70 of 4 0.47None
Adult carcass16 ± 40 of 4 0.20None
Larval CNS22 ± 120 of 4 0.30None
Larval Salivary gland170 ± 150 of 4 2.23None
Larval midgut82 ± 30 of 4 1.08None
Larval tubule26 ± 60 of 4 0.40None
Larval hindgut321 ± 944 of 4 4.21None
Larval fat body22 ± 90 of 4 0.30None
Larval trachea1071 ± 4294 of 414.03Up
Larval carcass3050 ± 2884 of 439.95Up
S2 cells (growing)54 ± 70 of 4 0.71None
Whole fly76 ± 362 of 4



(CG10953):

Annotation Number : CG10953
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034204
Gbrowse : chr2R:13052965-13054006 (-) // 100.0 //
Probeset : 1626521_x_at
Accessions : protein= NP_611199;, nucleotide= NM_137355;
FlyMine data for FBgn0034204.
BDGP gene expression has embryonic in situ data for CG10953: 23 pix of staining in 6 body parts.
VDRC has 4 RNAi stocks for FBgn0034204 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.10None
Head5 ± 10 of 4 0.10None
Eye20 ± 91 of 4 0.25None
Thoracicoabdominal ganglion6 ± 20 of 4 0.10None
Salivary gland8 ± 20 of 4 0.11None
Crop16 ± 30 of 4 0.20None
Midgut22 ± 90 of 4 0.30None
Tubule8 ± 10 of 4 0.10Down
Hindgut48 ± 80 of 4 0.60None
Heart8 ± 10 of 4 0.11None
Fat body39 ± 120 of 4 0.49None
Ovary4 ± 00 of 4 0.10None
Testis3 ± 00 of 4 0.00None
Male accessory glands8 ± 10 of 4 0.10None
Virgin spermatheca56 ± 42 of 4 0.70None
Mated spermatheca41 ± 33 of 4 0.52None
Adult carcass14 ± 30 of 4 0.20None
Larval CNS20 ± 140 of 4 0.26None
Larval Salivary gland191 ± 182 of 4 2.35None
Larval midgut66 ± 30 of 4 0.82None
Larval tubule24 ± 40 of 4 0.30None
Larval hindgut339 ± 1084 of 4 4.18None
Larval fat body24 ± 80 of 4 0.30None
Larval trachea1190 ± 4804 of 414.66Up
Larval carcass3186 ± 3184 of 439.22Up
S2 cells (growing)47 ± 30 of 4 0.58None
Whole fly81 ± 392 of 4

Looking for FBgn0034204. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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