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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034206 through 18771 annotations produced 1 hits



(CG18469):

Annotation Number : CG18469
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034206
Gbrowse : chr2R:13133273-13133782 (-) // 99.22 //
Probeset : 1628968_at
Accessions : protein= NP_611201;, nucleotide= NM_137357;
FlyMine data for FBgn0034206.
VDRC has 2 RNAi stocks for FBgn0034206 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye4 ± 10 of 4 0.20Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.20Down
Salivary gland7 ± 30 of 4 0.31Down
Crop5 ± 10 of 4 0.20Down
Midgut9 ± 12 of 4 0.40Down
Tubule6 ± 10 of 4 0.30Down
Hindgut2 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.14Down
Fat body8 ± 52 of 4 0.34Down
Ovary2 ± 00 of 4 0.10Down
Testis299 ± 74 of 412.20Up
Male accessory glands9 ± 20 of 4 0.40Down
Virgin spermatheca4 ± 10 of 4 0.16Down
Mated spermatheca1 ± 00 of 4 0.06Down
Adult carcass5 ± 10 of 4 0.20Down
Larval CNS3 ± 11 of 4 0.12Down
Larval Salivary gland5 ± 11 of 4 0.23Down
Larval midgut8 ± 04 of 4 0.35Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.12Down
Larval fat body48 ± 244 of 4 2.00None
Larval trachea3 ± 21 of 4 0.13Down
Larval carcass3 ± 10 of 4 0.13Down
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly24 ± 14 of 4

Looking for FBgn0034206. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime