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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034221 through 18771 annotations produced 1 hits



(CG10764):

Annotation Number : CG10764
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034221
Gbrowse : chr2R:13340923-13343236 (+) // 100.0 //
Probeset : 1624846_at
Accessions : protein= NP_611213;, nucleotide= NM_137369;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0034221.
BDGP gene expression has embryonic in situ data for CG10764: 4 pix of staining in 1 body parts.
Homophila reports that CG10764 is a close match (1e-11) to human gene LPA (NP_005568), a gene associated with [LPA deficiency, congenital] (3);{Coronary artery disease, susceptibility to} (1).
TRiP has 1 RNAi stocks for FBgn0034221 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034221 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head1 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.26Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.30Down
Salivary gland3 ± 10 of 4 0.36Down
Crop2 ± 10 of 4 0.30Down
Midgut1 ± 00 of 4 0.20Down
Tubule3 ± 00 of 4 0.40Down
Hindgut1 ± 00 of 4 0.20Down
Heart84 ± 74 of 4 9.27Up
Fat body6 ± 30 of 4 0.71None
Ovary0 ± 00 of 4 0.10Down
Testis112 ± 24 of 412.40Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca19 ± 24 of 4 2.11Up
Mated spermatheca21 ± 24 of 4 2.38Up
Adult carcass5 ± 20 of 4 0.60None
Larval CNS4 ± 13 of 4 0.51None
Larval Salivary gland6 ± 21 of 4 0.70None
Larval midgut10 ± 23 of 4 1.19None
Larval tubule417 ± 574 of 446.00Up
Larval hindgut8 ± 03 of 4 0.96None
Larval fat body1078 ± 1334 of 4118.90Up
Larval trachea21 ± 54 of 4 2.41Up
Larval carcass53 ± 14 of 4 5.89Up
S2 cells (growing)114 ± 74 of 412.67Up
Whole fly9 ± 13 of 4

Looking for FBgn0034221. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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