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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034223 through 18771 annotations produced 1 hits



(CG6522):

Annotation Number : CG6522
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034223
Gbrowse : chr2R:13353378-13356681 (-) // 100.0 //
Probeset : 1638678_at
Accessions : protein= NP_611215;, nucleotide= NM_137371;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0034223.
Homophila reports that CG6522 is a close match (1e-14) to human gene CYPHER;KIAA01613;LDB3;ZASP (NP_009009), a gene associated with Cardiomyopathy, dilated (3);Cardiomyopathy, dilated, with left ventricular noncompaction (3);Myopathy, myofibrillar, ZASP-related, 609452 (3).
VDRC has 1 RNAi stocks for FBgn0034223 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 24 of 4 0.60Down
Head56 94 of 4 0.40Down
Eye65 24 of 4 0.48Down
Thoracicoabdominal ganglion79 34 of 4 0.60Down
Salivary gland69 54 of 4 0.51Down
Crop66 44 of 4 0.50Down
Midgut68 24 of 4 0.50Down
Tubule75 24 of 4 0.50Down
Hindgut45 04 of 4 0.30Down
Heart76 24 of 4 0.56Down
Fat body50 74 of 4 0.37Down
Ovary412 34 of 4 3.00Up
Testis45 54 of 4 0.30Down
Male accessory glands85 84 of 4 0.60Down
Virgin spermatheca66 54 of 4 0.49Down
Mated spermatheca79 54 of 4 0.58Down
Adult carcass36 34 of 4 0.30Down
Larval CNS286 64 of 4 2.09Up
Larval Salivary gland42 44 of 4 0.31Down
Larval midgut109 94 of 4 0.79None
Larval tubule181 84 of 4 1.30Up
Larval hindgut162 64 of 4 1.18Up
Larval fat body84 24 of 4 0.60Down
Larval trachea240 114 of 4 1.75Up
Larval carcass103 24 of 4 0.75Down
S2 cells (growing)216 24 of 4 1.57Up
Whole fly137 74 of 4

Looking for FBgn0034223. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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