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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034229 through 18771 annotations produced 1 hits



(CG4847):

Annotation Number : CG4847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034229
Gbrowse : chr2R:13399954-13401364 (+) // 98.47 //
Probeset : 1638321_s_at
Accessions : protein= NP_611221; /// NP_725686; /// NP_725687; /// NP_725688; /// NP_995874;, nucleotide= NM_137377; /// NM_166235; /// NM_166236; /// NM_166237; /// NM_206152;
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004197 // cystei
FlyMine data for FBgn0034229.
BDGP gene expression has embryonic in situ data for CG4847: 35 pix of staining in 3 body parts.
Homophila reports that CG4847 is a close match (2e-25) to human gene CPPI;CTSC;HMS;JPD;PALS;PLS (NP_001805), a gene associated with Haim-Munk syndrome, 245010 (3);Papillon-Lefevre syndrome, 245000 (3);Periodontitis, juvenile, 170650 (3).
BioGrid reports that CG4847 interacts with CG9283 CG6357 .
VDRC has 2 RNAi stocks for FBgn0034229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 24 of 4 0.10Down
Head1522 ± 1394 of 4 3.10Up
Eye674 ± 384 of 4 1.39Up
Thoracicoabdominal ganglion26 ± 34 of 4 0.10Down
Salivary gland13 ± 31 of 4 0.03Down
Crop83 ± 64 of 4 0.20Down
Midgut10 ± 10 of 4 0.00Down
Tubule25 ± 82 of 4 0.10Down
Hindgut178 ± 124 of 4 0.40Down
Heart822 ± 1484 of 4 1.70None
Fat body1161 ± 774 of 4 2.40Up
Ovary5 ± 00 of 4 0.00Down
Testis31 ± 144 of 4 0.10Down
Male accessory glands9614 ± 1304 of 419.80Up
Virgin spermatheca1400 ± 704 of 4 2.89Up
Mated spermatheca1375 ± 1134 of 4 2.84Up
Adult carcass1758 ± 164 of 4 3.60Up
Larval CNS4 ± 20 of 4 0.01Down
Larval Salivary gland6 ± 20 of 4 0.01Down
Larval midgut3 ± 10 of 4 0.01Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut872 ± 774 of 4 1.80Up
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea390 ± 1014 of 4 0.81None
Larval carcass2708 ± 2444 of 4 5.59Up
S2 cells (growing)6 ± 00 of 4 0.01Down
Whole fly484 ± 384 of 4

Looking for FBgn0034229. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime