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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034230 through 18771 annotations produced 1 hits



(CG4853):

Annotation Number : CG4853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034230
Gbrowse : chr2R:13401709-13404947 (+) // 100.0 //
Probeset : 1625675_a_at
Accessions : protein= NP_611222; /// NP_725689;, nucleotide= NM_137378; /// NM_166238;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004536 // deoxyribonuclease activity // inferred from sequence or structural similarity /// 0005085 // guanyl-nucleotid
FlyMine data for FBgn0034230.
BDGP gene expression has embryonic in situ data for CG4853: 4 pix of staining in 1 body parts.
BioGrid reports that CG4853 interacts with CG5352 CG5640 CG5903 CG6046 CG6155 CG6258 CG6480 CG6770 CG8205 CG8527 CG8606 CG8709 CG9277 CG9327 .
TRiP has 1 RNAi stocks for FBgn0034230 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034230 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain285 24 of 4 4.80Up
Head109 94 of 4 1.80Up
Eye60 34 of 4 1.01None
Thoracicoabdominal ganglion336 94 of 4 5.70Up
Salivary gland150 54 of 4 2.54Up
Crop92 14 of 4 1.60Up
Midgut57 14 of 4 1.00None
Tubule49 14 of 4 0.80Down
Hindgut74 14 of 4 1.30Up
Heart63 34 of 4 1.08None
Fat body81 34 of 4 1.37Up
Ovary97 14 of 4 1.60Up
Testis33 14 of 4 0.60Down
Male accessory glands107 64 of 4 1.80Up
Virgin spermatheca79 54 of 4 1.33Up
Mated spermatheca84 74 of 4 1.42Up
Adult carcass81 54 of 4 1.40Up
Larval CNS218 124 of 4 3.68Up
Larval Salivary gland148 14 of 4 2.50Up
Larval midgut63 44 of 4 1.07None
Larval tubule85 34 of 4 1.40Up
Larval hindgut94 34 of 4 1.59Up
Larval fat body116 74 of 4 2.00Up
Larval trachea83 44 of 4 1.40Up
Larval carcass79 34 of 4 1.34Up
S2 cells (growing)223 34 of 4 3.76Up
Whole fly59 34 of 4

Looking for FBgn0034230. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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