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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034232 through 18771 annotations produced 1 hits



(CG4866):

Annotation Number : CG4866
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034232
Gbrowse : chr2R:13405770-13406525 (+) // 100.0 //
Probeset : 1640069_at
Accessions : protein= NP_001163174; /// NP_611224;, nucleotide= NM_001169703; /// NM_137380;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005761 // mitochondrial ribosome // inferred from s
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0003735 // structural constituent of ribosome // infer
FlyMine data for FBgn0034232.
BDGP gene expression has embryonic in situ data for CG4866: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034232 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 34 of 4 0.50Down
Head88 44 of 4 0.50Down
Eye101 24 of 4 0.57Down
Thoracicoabdominal ganglion91 24 of 4 0.50Down
Salivary gland95 104 of 4 0.53Down
Crop76 54 of 4 0.40Down
Midgut75 24 of 4 0.40Down
Tubule51 64 of 4 0.30Down
Hindgut54 24 of 4 0.30Down
Heart91 64 of 4 0.51Down
Fat body77 94 of 4 0.43Down
Ovary311 104 of 4 1.70Up
Testis64 24 of 4 0.40Down
Male accessory glands176 154 of 4 1.00None
Virgin spermatheca77 44 of 4 0.43Down
Mated spermatheca124 104 of 4 0.69Down
Adult carcass56 44 of 4 0.30Down
Larval CNS221 164 of 4 1.23Up
Larval Salivary gland179 74 of 4 1.00None
Larval midgut54 14 of 4 0.31Down
Larval tubule41 24 of 4 0.20Down
Larval hindgut86 84 of 4 0.48Down
Larval fat body48 44 of 4 0.30Down
Larval trachea245 474 of 4 1.37None
Larval carcass118 184 of 4 0.66Down
S2 cells (growing)177 34 of 4 0.99None
Whole fly179 114 of 4

Looking for FBgn0034232. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime